Laboratory of Evolutionary Protistology

List of all publications

Found: 52 records

• Kořený L., Sobotka R., Kovářová J., Gnipová A., Flegontov P., Horváth A., Oborník M., Ayala F.J., Lukeš J. (2012) Aerobic kinetoplastid flagellate Phytomonas does not require heme for viability. PNAS 109: 3808-3813. (link)

  DOI: 10.1073/pnas.1201089109

  Documents for download: 2012 Koreny PNAS 3808

• Oborník M., Modrý D., Lukeš M., Černotíková-Stříbrná E., Cihlář J., Tesařová M., Kotabová E., Vancová M., Prášil O., Lukeš J. (2012) Morphology, Ultrastructure and Life Cycle of Vitrella brassicaformis n. sp., n. gen., a Novel Chromerid from the Great Barrier Reef. Protist 163: 306-323. (pdf)

  DOI: 10.1016/j.protis.2011.09.001

• Valenčáková A., Balent P., Ravaszová P., Horák A., Oborník M., Halanová M., Malčeková B., Novotný F., Goldová M. (2012) Molecular identification and genotyping of Microsporidia in selected hosts. Parasitology Research 110: 689-693.

  DOI: 10.1007/s00436-011-2543-9

• Allen A.E., Dupont Ch.L., Oborník M., Horák A., Nunes-Nesi A., McCrow J.P., Zheng H., Johnson D.A., Hu H., Fernie A.R., Bowler Ch. (2011) Evolution and metabolic significance of the urea cycle in photosynthetic diatoms. Nature 473: 203–209.

  DOI: 10.1038/nature10074

• Borovička J, Noordeloos ME, Gryndler M, Oborník M. (2011) Molecular phylogeny of Psilocybe cyanescens complex in Europe, with reference to the position of the secotioid Weraroa novae-zelandiae. Mycological Progress 10: 149–155.

  DOI: 10.1007/s11557-010-0684-3

• Černotíková E., Horák A., Moravec F. (2011) Phylogenetic relationships of some spirurine nematodes (Nematoda: Chromadorea: Rhabditida: Spirurina) parasitic in fishes inferred from SSU rRNA gene sequences. Folia Parasitologica 58: 135–148.

  Documents for download: 2011_Cernotikova_FP_135

• Koblížek M., Janouškovec J., Oborník M., Johnson J.H., Ferriera S., Falkowski P.G. (2011) Genome Sequence of the Marine Photoheterotrophic Bacterium Erythrobacter sp. Strain NAP1. Journal of Bacteriology 193: 5881–5882.

  DOI: 10.1128/JB.05845-11

• Kořený L., Oborník M. (2011) Sequence evidence for the presence of two tetrapyrrole pathways in Euglena gracilis. Genome Biology and Evolution 3: 359–364.

  DOI: 10.1093/gbe/evr029

• Kořený L., Sobotka R., Janouškovec J., Keeling P.J., Oborník M. (2011) Tetrapyrrole synthesis of photosynthetic chromerids is likely homologous to the unusual pathway of apicomplexan parasites. Plant Cell 23: 3454–3462.

  DOI: 10.1105/tpc.111.089102

• Kubelová M., Tkadlec E., Bednář M., Roubalová E., Široký P. (2011) West-to-east differences of Babesia canis canis prevalence in Dermacentor reticulatus ticks in Slovakia. Veterinary Parasitology 180: 191–196.

  DOI: 10.1016/j.vetpar.2011.03.033

• Oborník M., Vancová M., Lai D.H., Janouškovec J., Keeling J.P., Lukeš J. (2011) Morphology and Ultrastructure of Multiple Life Cycle Stages of the Photosynthetic Relative of Apicomplexa, Chromera velia. Protist 162: 115–130. (pdf)

  DOI: 10.1016/j.protis.2010.02.004

• Saldarriaga J.F., Gile G.H., James E.R., Horák A., Scheffrahn R.H., Keeling P.J. (2011) Morphology and molecular phylogeny of Pseudotrichonympha hertwigi and Pseudotrichonympha paulistana (Trichonymphea, Parabasalia) from neotropical rhinotermitids. Journal of Eukaryotic Microbiology 58: 487–496.

  DOI: 10.1111/j.1550-7408.2011.00575.x

• Janouškovec J., Horák A., Oborník M., Lukeš J., Keeling P.J. (2010) A common red algal origin of the apicomplexan, dinoflagellate, and heterokont plastids. Proceedings of the National Academy of Sciences of the United States of America 107: 10949–10954. (pdf)

  DOI: 10.1073/pnas.1003335107

• Jiroutová K., Kořený L., Bowler C., Oborník M. (2010) A gene in the process of endosymbiotic transfer. PLoS ONE 5: e13234.

  DOI: 10.1371/journal.pone.0013234

• Kořený L., Lukeš J., Oborník M. (2010) Evolution of the heme synthetic pathway in kinetoplastid flagellates: An essential pathway that is not essential after all? International Journal for Parasitology 40: 149–156. (pdf)

  DOI: 10.1016/j.ijpara.2009.11.007

• Poliak P., Van Hoewyk D., Oborník M., Zíková A. , Stuart K., Tachezy J., Pilon M., Lukeš J. (2010) Functions and cellular localization of cysteine desulfurase and selenocysteine lyase in Trypanosoma brucei. FEBS Journal 277: 383–393. (pdf)

  DOI: 10.1111/j.1742-4658.2009.07489.x

• Chroňáková A., Horák A., Elhottová D., Krištůfek V. (2009) Diverse archaeal community of a bat guano pile in Domica Cave (Slovak Karst, Slovakia). Folia Microbiologica 54: 436–446.

  DOI: 10.1007/s12223-009-0061-2

• JIRKŮ M., JIRKŮ M., OBORNÍK M., LUKEŠ J., MODRÝ D. (2009) Goussia Labbé, 1896(Apicomplexa, Eimeriorina) in Amphibia: diversity, biology, molecular phylogeny and comments on the status of the genus. Protist 160: 123-136. (pdf)

  DOI: 10.1016/j.protis.2008.08.003

• JIRKŮ M., JIRKŮ M., OBORNÍK M., LUKEŠ J., MODRÝ D. (2009) A model for taxonomic work on homoxenous coccidia: redescription, host specificity, and molecular phylogeny of Eimeria ranae Dobell, 1909, with a review of anuran-host Eimeria (Apicomplexa: Eimeriorina). Journal of Eukaryotic Microbiology 56: 39-51. (pdf)

  DOI: 10.1111/j.1550-7408.2008.00362.x

• OBORNÍK M., JANOUŠKOVEC J., CHRUDIMSKÝ T., LUKEŠ J. (2009) Evolution of the apicoplast and its hosts: from heterotrophy to autotrophy and back again. International Journal for Parasitology 39: 1-12. (pdf)

  DOI: 10.1016/j.ijpara.2008.07.010

• BOWLER C., ALLEN A.E., BADGER J.H., GRIMWOOD J., JABBARI K., KUO A., MAHESWARI U., MARTENS C., MAUMUS F., OTILLAR R.P., RAYKO E., SALAMOV A., VANDEPOELE K., BESZTERI B., GRUBER A., HEIJDE M., KATINKA M., MOCK T., VALENTIN K., VERRET F., BERGES J.A., BROWNLEE C., CADORET J.-P., CHIOVITTI A., CHOI C.-J., COESEL S., DE MARTINO A., DETTER J.C., DURKIN C., FALCIATORE A., FOURNET J., HARUTA M., HUYSMAN M.J.J., JENKINS B.D., JIROUTOVÁ K., JORGENSEN R.E., JOUBERT Y., KAPLAN A., KRÖGER N., KROTH P.G., LA ROCHE J., LINDQUIST E., LOMMER M., MARTIN–JÉZÉQUEL V., LOPEZ P.J., LUCAS S., MANGOGNA M., MCGINNIS K., MEDLIN L.K., MONTSANT A., OUDOT–LE SECQ M.-P., NAPOLI C., OBORNÍK M., SCHNITZLER PARKER M., PETIT J.-L., PORCEL B.M., POULSEN N., ROBISON M., RYCHLEWSKI L., RYNEARSON T.A., SCHMUTZ J., SHAPIRO H., SIAUT M., STANLEY M., SUSSMAN M.R., TAYLOR A.R., VARDI A., VON DASSOW P., VYVERMAN W., WILLIS A., WYRWICZ L.S., ROKHSAR D.S., WEISSENBACH J., ARMBRUST E.V., GREEN B.R., VAN DE PEER Y., GRIGORIEV I.V. (2008) The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature 456: 239-244.

  DOI: 10.1038/nature07410

• COESEL S., OBORNÍK M., VARELA J., FALCIATORE A., BOWLER C. (2008) Evolutionary origins and functions of the carotenoid biosynthetic pathway in marine diatoms. PLoS ONE: 0-0.

  DOI: 10.1371/journal.pone.0002896

• MALETZKY A., MIKULÍČEK P., FRANZEN M., GOLDSCHMID A., GRUBER H.-J., HORÁK A., KYEK M. (2008) Hybridization and introgression between two species of crested newts (Triturus cristatus and T. carnifex) along contact zones in Germany and Austria: morphological and molecular data. Herpetological Journal 18: 1-15.

• MOORE R.B., OBORNÍK M., JANOUŠKOVEC J., CHRUDIMSKÝ T., VANCOVÁ M., GREEN D.H., WRIGHT S.W., DAVIES N.W., BOLCH C.J.S., HEIMANN K., ŠLAPETA J., HOEGH-GULDBERG O., LOGSDON J.M., CARTER D.A. (2008) A photosynthetic alveolate closely related to apicomplexan parasites. Nature 451: 959-963.

  DOI: 10.1038/nature06635

• HYLIŠ M., OBORNÍK M., NEBESÁŘOVÁ J., VÁVRA J. (2007) Aquatic tetrasporoblastic microsporidia from caddis flies (Insecta, Trichoptera): Characterization, phylogeny and taxonomic reevaluation of the genera Episetum Larsson, 1986, Pyrotheca Hesse, 1935 and Cougourdella Hesse, 1935. European Journal of Protistology 43: 205-224.

  DOI: 10.1016/j.ejop.2007.03.004

• JIROUTOVÁ K., HORÁK A., BOWLER C., OBORNÍK M. (2007) Tryptophan biosynthesis in stramenopiles: eukaryotic winners in the diatom complex chloroplast. Journal of Molecular Evolution 65: 496-511.

  DOI: 10.1007/s00239-007-9022-z

• LUKEŠ J., MAURICIO I.L., SCHÖNIAN G., DUJARDIN J.-C., SOTERIADOU K., DEDET J.-P., KUHLS K., QUISPE TINTAYA W., JIRKŮ M., CHOCHOLOVÁ E., HARALAMBOUS C., PRATLONG F., OBORNÍK M., HORÁK A., AYALA F.J., MILES M.A. (2007) Evolutionary and geographical history of the Leishmania donovani complex with a revision of current taxonomy. Proceedings of the National Academy of Science U.S.A. 104: 9375-9380. (pdf)

  DOI: 10.1073/pnas.0703678104

• SVOBODOVÁ M., ZÍDKOVÁ L., ČEPIČKA I., OBORNÍK M., LUKEŠ J., VOTÝPKA J. (2007) Sergeia podlipaevi gen. nov., sp. nov. (Trypanosomatidae, Kinetoplastida): a new parasite of the biting midges (Ceratopogonidae, Diptera). International Journal of Systematic and Evolutionary Microbiology 57: 423-432. (pdf)

  DOI: 10.1099/ijs.0.64557-0

• ZEMANOVÁ E., JIRKŮ M., MAURICIO I.L., HORÁK A., MILES M.A., LUKEŠ J. (2007) The Leishmania donovani complex: Genotypes of five metabolic enzymes (ICD, ME, MPI, G6PDH, FH), new targets for multilocus sequence typing. International Journal for Parasitolology 37: 149-160. (pdf)

  DOI: 10.1016/j.ijpara.2006.08.008

• HYLIŠ M., PILARSKA D.K., OBORNÍK M., VÁVRA J., SOLTER L.F., WEISER J., LINDE A., MCMANUS M.L. (2006) Nosema chrysorrhoeae n. sp. (Microsporidia), isolated from browntail moth (Euproctis chrysorrhoea L.) (Lepidoptera, Lymantriidae) in Bulgaria: characterization and phylogenetic relationships. Journal of Invertebrate Pathology 91: 105-114.

  DOI: 10.1016/j.jip.2005.11.006

• KOPEČNÁ J., JIRKŮ M., OBORNÍK M., TOKAREV Y.S., LUKEŠ J., MODRÝ D. (2006) Phylogenetic analysis of coccidian parasites from invertebrates: search for missing links. Protist 157: 173-183. (pdf)

  DOI: 10.1016/j.protis.2006.02.005

• MACHÁČKOVÁ M., OBORNÍK M., KOPECKÝ J. (2006) Effect of salivary gland extract from Ixodes ricinus ticks on the proliferation of Borrelia burgdorferi sensu stricto in vivo. Folia Parasitologica 53: 153-158.

• VÁVRA J., HORÁK A., MODRÝ D., LUKEŠ J., KOUDELA B. (2006) Trachipleistophora extenrec, n. sp., a new microsporidian (Fungi: Microsporidia) infecting mammals. Journal of Eukaryotic Microbiology 53: 464-476. (pdf)

  DOI: 10.1111/j.1550-7408.2006.00139.x

• WIJOVÁ M., MORAVEC F., HORÁK A., LUKEŠ J. (2006) Evolutionary relationships of Spirurina (Nematoda: Chromadorea: Rhabditida) with special emphasis on dracunculoid nematodes inferred from SSU rRNA gene sequences. International Journal for Parasitology 36: 1067-1075. (pdf)

  DOI: 10.1016/j.ijpara.2006.04.005

• HYLIŠ M., WEISER J., OBORNÍK M., VÁVRA J. (2005) DNA isolation from museum and type collection slides of microsporidia. Journal of Invertebrate Pathology 88: 257-260.

  DOI: 10.1016/j.jip.2005.02.004

• LEŽALOVÁ R., TKADLEC E., OBORNÍK M., ŠIMEK J., HONZA M. (2005) Should males come first? The relationship between offspring hatching order and sex in the black-headed gull Larus ridibundus. Journal of Avian Biology 36: 478-483.

  DOI: 10.1111/j.0908-8857.2005.03466.x

• LUKEŠ J., HORÁK A., SCHOLZ T. (2005) Helminth genome projects: all or nothing. Trends in Parasitology 21: 265-266. (pdf)

  DOI: 10.1016/j.pt.2005.04.004

• OBORNÍK M., GREEN B.R. (2005) Mosaic origin of the heme biosynthesis pathway in photosynthetic eukaryotes. Molecular Biology and Evolution 22: 2343-2353.

  DOI: 10.1093/molbev/msi230

• VÁVRA J., HYLIŠ M., OBORNÍK M., VOSSBRINCK C.R. (2005) Microsporidia in aquatic microcrustacea: the copepod microsporidium Marssoniella elegans Lemmermann, 1900 revisited. Folia Parasitologica 52: 163-172.

• WIJOVÁ M., MORAVEC F., HORÁK A., MODRÝ D., LUKEŠ J. (2005) Phylogenetic position of Dracunculus medinensis and some related nematodes inferred from 18S rRNA. Parasitology Research 96: 133-135. (pdf)

  DOI: 10.1007/s00436-005-1330-x

• ARMBRUST E.V., BERGES J.A., BOWLER C., GREEN B.R., MARTINEZ D., PUTNAM N.H., ZHOU S., ALLEN A.E., APT K.E., BECHNER M., BRZEZINSKI M.A., CHAAL B.K., CHIOVITTI A., DAVIS A.K., DEMAREST M.S., DETTER J.C., GLAVINA T., GOODSTEIN D., HADI M.Z., HELLSTEN U (2004) The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Science 306: 79-86.

  DOI: 10.1126/science.1101156

• LOGAN F.J., HORÁK A., ŠTEFKA J., AYDOGDU A., SCHOLZ T. (2004) The phylogeny of diphyllobothriid tapeworms (Cestoda: Pseudophyllidea) based on ITS-2 rDNA sequences. Parasitology Research 94: 10-15.

  DOI: 10.1007/s00436-004-1164-y

• VOTÝPKA J., LUKEŠ J., OBORNÍK M. (2004) Phylogenetic relationship of Trypanosoma corvi with other avian trypanosomes. Acta Protozoologica 43: 225-231. (pdf)

• OBORNÍK M., DE PEER Y. VAN, HYPŠA V., FRICKEY T., ŠLAPETA J. R., MEYER A., LUKEŠ J. (2002) Phylogenetic analyses suggest lateral gene transfer from the mitochondrion to the apicoplast. Gene 285: 109-118. (pdf)

  DOI: 10.1016/S0378-1119(02)00427-4

• OBORNÍK M., JIRKŮ M., ŠLAPETA J. R., MODRÝ D., KOUDELA B., LUKEŠ J. (2002) Notes on coccidian phylogeny, based on the apicoplast small subunit ribosomal DNA. Parasitology Research 88: 360-363.

  DOI: 10.1007/s00436-001-0557-4

• VOTÝPKA J., OBORNÍK M., VOLF P., SVOBODOVÁ M., LUKEŠ J. (2002) Trypanosoma avium of raptors (Falconiformes): phylogeny and identification of vectors. Parasitology 125: 253-263. (pdf)

  DOI: 10.1017/S0031182002002093

• DYKOVÁ I., KYSELOVÁ I., PECKOVÁ H., OBORNÍK M., LUKEŠ J. (2001) Identity of Naegleria strains isolated from organs of freshwater fishes. Diseases of Aquatic Organisms 46: 115-121. (pdf)

• MODRÝ D., ŠLAPETA J.R., JIRKŮ M., OBORNÍK M., LUKEŠ J., KOUDELA B. (2001) Phylogenetic position of a renal coccidium of the European green frogs, ‘Isospora’ lieberkuehni Labbé, 1894 (Apicomplexa: Sarcocystidae) and its taxonomic implications. International Journal of Systematic and Evolutionary Microbiology 51: 767-772. (pdf)

• OBORNÍK M., JIRKŮ M., DOLEŽEL D. (2001) Phylogeny of mitosporic entomopathogenic fungi: Is the genus Paecilomyces polyphyletic? Canadian Journal of Microbiology 47: 813-819.

  DOI: 10.1139/cjm-47-9-813

• ŠLAPETA J.R., MODRÝ D., VOTÝPKA J., JIRKŮ M., OBORNÍK M., LUKEŠ J., KOUDELA B. (2001) Eimeria telekii n. sp. (Apicomplexa: Coccidia) from Lemniscomys striatus (Rodentia: Muridae): morphology, pathology and phylogeny. Parasitology 122: 133-143. (pdf)

  DOI: 10.1017/S0031182001007259

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Sections > Molecular Parasitology > Laboratory of Evolutionary Protistology > List of publications