Mgr. Lukáš Trantírek, Ph.D.

Job Position: Worker

Publications
Total found: 16 records
Školáková P., Foldynová-Trantírková S., Bednářová K., Fiala R., Vorlíčková M., Trantírek L. (2015) Unique C. elegans telomeric overhang structures reveal the evolutionarily conserved properties of telomeric DNA Nucleic Acids Research 43 : 4733-4745.
DOI: 10.1093/nar/gkv296
Fessl T., Adamec F., Polívka T., Foldynová-Trantírková S., Vácha F., Trantírek L. (2012) Towards characterization of DNA structure under physiological conditions in vivo at the single-molecule level using single-pair FRET. Nucleic Acids Research 40 : e121.
DOI: 10.1093/nar/gks333

Documents to download:
Fessl_et_al_2012 (pdf)
Fiala R., Špačková N., Foldynová-Trantírková S., Šponer J., Sklenář V., Trantírek L. (2011) NMR cross-correlated relaxation rates reveal ion coordination sites in DNA. Journal of the American Chemical Society 133 : 13790– 13793.
DOI: 10.1021/ja202397p
Hänsel R., Loehr F., Foldynová-Trantírková S., Bamberg E., Trantírek L., Doetsch V. (2011) The parallel G-quadruplex structure of vertebrate telomeric repeat sequences is not the preferred folding topology under physiological conditions. Nucleic Acids Research 39 : 5768–5775.
DOI: 10.1093/nar/gkr174
Foldynová-Trantírková S., Sekyrová P., Tmejová K., Brumovská , Bernatík O., Blankenfeldt W., Krejčí P., Kozubík A., Doležal T., Trantírek L., Bryja V. (2010) Breast cancer-specific mutations in CK1epsilon inhibit Wnt/beta-catenin and activate the Wnt/Rac1/JNK and NFAT pathways to decrease cell adhesion and promote cell migration. Breast Cancer Research 12 : R30.
DOI: 10.1186/bcr2581
Kubíček K., Monnet J., Scintilla S., Kopečná J., Arnesano F., Trantírek L., Chopard C., Natile G., Kozelka J. (2010) Unusual Interstrand Pt(S,S-diaminocyclohexane)-GG Crosslink formed by rearrangement of a classical intrastrand crosslink within a DNA duplex. Chemistry-An Asian Journal 5 : 244–247.
DOI: 10.1002/asia.200900655
Vokáčová Z., Trantírek L., Sychrovský V. (2010) Evaluating the effects of the nonplanarity of nucleic acid bases on NMR, IR, and vibrational circular dichroism spectra: a density functional theory computational study. Journal of Physical Chemistry A 114 : 10202–10208.
DOI: 10.1021/jp102329t
Foldynová-Trantírková S., Matulová J., Dötsch V., Lohr F., Cirstea I., Alexandrov K., Breitling R., Lukeš J., Trantírek L. (2009) A cost-effective amino-acidtype selective isotope labeling of proteins expressed in Leishmania tarentolae. Journal of Biomolecular Structure & Dynamics 26 : 755-761.


Documents to download:
Foldynova-Trantirkova et al. 2009 JBSD (pdf)
Hänsel R., Foldynová-Trantírková S., Lähr F., Buck J., Bongartz E., Bamberg E., Schwalbe H., Dötsch V., Trantírek L. (2009) Evaluation of parameters critical for observing nucleic acids inside living Xenopus laevis oocytes by in-cell NMR spectroscopy. Journal of the American Chemical Society 131 : 15961-15768.
DOI: 10.1021/ja9052027
Sychrovský V., Foldynová-Trantírková S., Špačková N., Robeyns K., Van Meervelt L., Blankenfeldt W., Vokáčová Z., Šponer J., Trantírek L. (2009) Revisiting the planarity of nucleic acid bases: pyramidilization at glycosidic nitrogen in purine bases is modulated by orientation of glycosidic torion. Nucleic Acids Research 37 : 1-11.
DOI: 10.1093/nar/gkp783
Brumovská , Sychrovský V., Vokáčová Z., Šponer J., Schneider B., Trantírek L. (2008) Effect of local sugar and base geometry on (13)C and (15)N magnetic shielding anisotropy in DNA nucleosides. Journal of Biomolecular NMR 42 : 209-223.
DOI: 10.1007/s10858-008-9278-7
Zíková A., Kopečná J., Schumacher M., Stuart K., Trantírek L., Lukeš J. (2008) Structure and function of the native and recombinant mitochondrial MRP1/MRP2 complex from Trypanosoma brucei. International Journal for Parasitology 38 : 901-912.
DOI: 10.1016/j.ijpara.2007.12.009

Documents to download:
Zikova et al. 2008 IJP (pdf)
Trantírek L., Caha E., Kadeřávek P., Fiala R. (2007) NMR 13C-relaxation study of base and sugar dynamics in GCAA RNA hairpin tetraloop. Journal of Biomolecular Structure and Dynamics 25 : 243-252.
Richards R., Wu H., Trantírek L., O’connor C., Collins K., Feigon J. (2006) Structural study of elements of Tetrahymena telomerase RNA stem-loop IV domain important for function. RNA – A Publication of the RNA Society 12 : 1475-1485.
DOI: 10.1261/rna.112306
Schumacher M., Karamooz E., Zíková A., Trantírek L., Lukeš J. (2006) Crystal structures of T. brucei MRP1/MRP2 guide-RNA binding complex reveal RNA matchmaking mechanism. Cell 126 : 701-711.
DOI: 10.1016/j.cell.2006.06.047

Documents to download:
Schimacher et al. 2006 Cell (pdf)
Sychrovský V., Šponer J., Trantírek L., Schneider B. (2006) Indirect NMR-spin coupling constants 3J(P,C) and 2J(P,H) across the P–O•••H–C link can be used for structure determination of nucleic acids. Journal of the American Chemical Society 128 : 6823-6828.
DOI: 10.1021/ja0551180

CONTACT

Biology Centre CAS
Institute of Parasitology
Branišovská 1160/31
370 05 České Budějovice

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