List of publications

Total found: 54 records
Prokopchuk G., Korytář T., Juricová V., Majstorović J., Horák A., Šimek K., Lukeš J. (2022) Trophic flexibility of marine diplonemids - switching from osmotrophy to bacterivory The ISME Journal 16: 1409–1419.
DOI: 10.1038/s41396-022-01192-0

Documents to download:
Prokopchuk_2022_ISMEJ (pdf)
Tashyreva D., Simpson A., Prokopchuk G., Škodová-Sveráková I., Butenko A., Hammond M., George E.E., Flegontova O., Záhonová K., Faktorová D., Yabuki A., Horák A., Keeling P., Lukeš J. (2022) Diplonemids - A Review on "New" Flagellates on the Oceanic Block Protist 173: 125868.
DOI: 10.1016/j.protis.2022.125868

Documents to download:
Tashyreva_2022_Protist (pdf)
Barcytė D., Eikrem W., Engesmo A., Seoane S., Wohlmann J., Horák A., Yurchenko T., Eliáš M. (2021) Olisthodiscus represents a new class of Ochrophyta Journal of Phycology 57: 1094–1118.
DOI: 10.1111/jpy.13155
Škodová-Sveráková I., Záhonová K., Juricová V., Danchenko M., Moos M., Baráth P., Prokopchuk G., Butenko A., Lukáčová V., Kohútová L., Bučková B., Horák A., Faktorová D., Horváth A., Šimek P., Lukeš J. (2021) Highly flexible metabolism of the marine euglenozoan protist /Diplonema papillatum/. BMC Biology 19: 251.
DOI: 10.1186/s12915-021-01186-y

Documents to download:
Skodova-Sverakova_2021_BMCBiol (pdf)
Turnšek J., Brunson J.K., Viedma M.D.P.M., Deerinck T.J., Horák A., Oborník M., Bielinski V.A., Allen A.E. (2021) Proximity proteomics in a marine diatom reveals a putative cell surface-to-chloroplast iron trafficking pathway eLife 10: e52770.
DOI: 10.7554/eLife.52770
Butenko A., Opperdoes F.R., Flegontova O., Horák A., Hampl V., Keeling P., Gawryluk R., Tikhonenkov D.V., Flegontov P., Lukeš J. (2020) Evolution of metabolic capabilities and molecular features of diplonemids, kinetoplastids, and euglenids BMC biology 18: 23.
DOI: 10.1186/s12915-020-0754-1

Documents to download:
Butenko_BMC-Biology_2020 (pdf)
Flegontova O., Flegontov P., Castaňeda Londoňo P., Walczowski W., Śantić D., Edgcomb V., Lukeš J., Horák A. (2020) Environmental determinants of the distribution of planktonic diplonemids and kinetoplastids in the oceans Environmental Microbiology 22: 4014–4031.
DOI: 10.1111/1462-2920.15190

Documents to download:
Flegontova_2020_EnvMicrob (pdf)
George E.E., Husník F., Tashyreva D., Prokopchuk G., Horák A., Kwong W.K., Lukeš J., Keeling P. (2020) Highly Reduced Genomes of Protist Endosymbionts Show Evolutionary Convergence Current Biology 30: 925-933.
DOI: 10.1016/j.cub.2019.12.070

Documents to download:
George_2020_CurrentBiology (pdf)
Horák A., Allen A.E., Oborník M. (2020) Common origin of ornithine–urea cycle in opisthokonts and stramenopiles Scientific Reports 10: 16687.
DOI: 10.1038/s41598-020-73715-8
Kolísko M., Flegontova O., Karnkowska A., Lax G., Maritz J.M., Pánek T., Táborský P., Carlton J.M., Čepička I., Horák A., Lukeš J., Simpson A., Tai V. (2020) EukRef-excavates: seven curated SSU ribosomal RNA gene databases Database 2020: baaa080.
DOI: 10.1093/database/baaa080

Documents to download:
Kolisko_2020_Database (pdf)
Smýkal V., Pivarči M., Provazník J., Bazalová O., Jedlička P., Lukšan O., Horák A., Vaněčková H., Beneš V., Fiala I., Hanus R., Doležel D. (2020) Complex evolution of insect insulin receptors and homologous decoy receptors, and functional significance of their multiplicity. Molecular Biology and Evolution 37: 1775-1789.
DOI: 10.1093/molbev/msaa048
Caputi L., Carradec Q., Eveillard D., Kirilovsky A., Pelletier E., Karlusich P.J.J., Vieira F.R.J., Villar E., Chaffron S., Malviya S., Scalco E., Acinas S.G., Alberti A., Aury J.-M., Benoiston A.-S., Bertrand A., Biard T., Bittner L., Boccara M., Brum J.R., Brunet C., Busseni G., Carratala A., Claustre H., Coeelho L.P., Colin S., D’Aniello S., Da Silva C., Del Core M., Doré H., Gasparini S., Kokoszka F., Jamet J.-L., Lejeusne C., Lepoivre C., Lescot M., Lima-Mendez G., Lombard F., Lukeš J., Maillet N., Madoui M., Martinez E., Mazzocchi M.G., Néou M.B., Paz-Yepes J., Poulain J., Ramondenc S., Romagnan J.-B., Roux S., Salvagio Manta D., Sanges R., Speich S., Speich S., Sprovieri M., Sunagawa S., Taillander V., Tanaka A., Tirichine L., Trottier C., Uitz J., Veluchamy A., Veselá J., Vincent F., Yau S., Kandels-Lewis S., Searson S., Dimier C., Picheral M., Bork P., Boss E., de Vargas C., Follows M.J., Grimsley N., Guidi L., Hingamp P., Karsenti E., Sordino P., Stemmann L., Sullivan M.B., Not F., Ribera d‘Alcala M., Wincker P., Bowler C., Iudicone D. (2019) Community-level responses to iron availability in open ocean planktonic ecosystems. Global biogeochemical cycles 33: 391–419.
DOI: 10.1029/2018GB006022

Documents to download:
Caputi_et al._2019 (pdf)
Coale T.H., Moosburner M., Horák A., Oborník M., Barbeau K.A., Allen A.E. (2019) Reduction-dependent siderophore assimilation in a model pennate diatom Proceedings of the National Academy of Sciences of United States of America 116: 23609-23617.
DOI: 10.1073/pnas.1907234116
Flegontov P., Altınışık E., Changmai P., Rohland N., Mallick S., Adamski N., Bolnick D.A., Broomandkhoshbacht N., Candilio F., Culleton B.J., Flegontova O., Friesen T.M., Jeong Ch., Keating D., Kennett D.J., Kim A.M., Lamnidis T.C., Lawson A.M., Olalde I., Oppenheimer J., Potter B.A., Raff J., Sattler R.A., Skoglund P., Stewardson K., Vajda E.J., Vasilyev S., Veselovskaya E., Hayes G., O’Rourke D.H., Krause J., Pinhasi R., Reich D., Schiffels S. (2019) Palaeo-Eskimo genetic ancestry and the peopling of Chukotka and North America Nature 570: 236–240.
DOI: 31168094
Prokopchuk G., Tashyreva D., Yabuki A., Horák A., Masařová P., Lukeš J. (2019) Morphological, ultrastructural, motility and evolutionary characterization of two new Hemistasiidae species Protist 170: 259–282.
DOI: 10.1016/j.protis.2019.04.001

Documents to download:
Prokopchuk et al._2019_Protist (pdf)
Smith S.R., Dupont C.L., McCarthy J.K., Boddrick J.T., Oborník M., Horák A., Füssy Z., Cihlář J., Kleessen S., Zheng H., McCrow J.P., Hixson K.K., Araújo W.L., Nunes-Nesi A., Fernie A., Nikoloski Z., Palsson B.O., Allen A.E. (2019) Evolution and regulation of nitrogen flux through compartmentalized metabolic networks in a marine diatom Nature Communications 10: 4552.
DOI: 10.1038/s41467-019-12407-y
Faktorová D., Bär A., Hashimi H., McKenney K., Horák A., Schnaufer A., Rubio M., Alfonzo J., Lukeš J. (2018) TbUTP10, a protein involved in early stages of pre-18S rRNA processing in Trypanosoma brucei Molecular and Biochemical Parasitology 225: 84–93.
DOI: 10.1016/j.molbiopara.2018.09.003

Documents to download:
Faktorova_et al._2018 (pdf)
Flegontova O., Flegontov P., Malviya S., Poulain J., de Vargas C., Bowler C., Lukeš J., Horák A. (2018) Neobodonids are dominant kinetoplastids in the global ocean Environmental Microbiology 20: 878-889.
DOI: 10.1111/1462-2920.14034

Documents to download:
Flegontova_et.al_2018 (pdf)
McQuaid J.B., Kustka A.B., Oborník M., Horák A., Mccrow J., Karas B.J., Zheng H., Kindeberg T., Andersson A.J., Barbeau K.A., Allen A. (2018) Carbonate-sensitive phytotransferrin controls high-affinity iron uptake in diatoms Nature 555: 534-537.
DOI: 10.1038/nature25982
Tashyreva D., Prokopchuk G., Votýpka J., Yabuki A., Horák A., Lukeš J. (2018) Life cycle, ultrastructure, and phylogeny of new diplonemids and their endosymbiotic bacteria mBio 9: e02447-17.
DOI: 10.1128/mBio.02447-17

Documents to download:
Tashyreva et al. 2018 mBio (pdf)

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