Beránková M., Holoubek J.,
Hönig V., Matúšová Z.,
Palus M.,
Salát J., Krayem I., Vojtíšková J. , Svoboda P.,
Prančlová V., Valihrach L., Demant P., Lipoldová M.,
Růžek D. (2025) Genotype-driven sensitivity of mice to tick-borne encephalitis virus correlates with differential host responses in peripheral macrophages and brain Journal of Neuroinflammation
22
: 22. DOI: 10.1186/s12974-025-03354-1
|
Beránková M., Leoni S., Holoubek J., Haviernik J.,
Salát J., Grandgirard D., Leib S.L.,
Růžek D. (2025) Three-dimensional mapping of tick-borne encephalitis virus distribution in the mouse brain using a newly engineered TurboGFP reporter virus. Emerging Microbes & Infections
14
: 2542246. DOI: 10.1080/22221751.2025.2542246
|
Dvorak M., Arbon D.,
Salát J.,
Fořtová A., Pajuelo Reguera D., Frčková T., Holoubek J., Balounová J., Procházka J., Sedláček R.,
Růžek D. (2025) Sex-dependent impairment of antibody responses to tick-borne encephalitis virus vaccination and infection in obese mice. Journal of General Virology
106
: 2161. DOI: 10.1099/jgv.0.002161
|
Holoubek J.,
Salát J., Matkovic M., Bednar P., Novotný P., Hradilek M., Majerová T., Rosendal E.,
Eyer L.,
Fořtová A.,
Beránková M., Bell-Sakyi L., Överby A.K., Cavalli A., Bonomi M., Rey F.A.,
Růžek D. (2025) Irreversible furin cleavage site exposure renders immature tick-borne flaviviruses fully infectious. Nature Communications
16
: 7491. DOI: 10.1038/s41467-025-62750-6
|
Maryewski X.A., Krasilnikov M.S., Straková P., Holoubek J., Frčková T., Panina I.S., Krylov N.A., Gvozdev D.A., Denisov V.S., Semenov A. N., Lotosh N.Y., Selishcheva A.A., Gulyak E.L., Kozhemyakin G.L., Korshun V.A., Efremov R.G., Ustinov A.V.,
Růžek D.,
Eyer L., Alferova V.A. (2025) Membranea-active singlet oxygen photogenerators as a paradigm for broad-spectrum antivirals: the case of halogenated (BOron)-DIPYrromethenes ACC Applied Materials and Interfaces
17
: 4502–4528. DOI: 10.1021/acsami.4c17482
|
Rosendal E., Bisikalo K., Willekens S.M.A., Lindgren M., Holoubek J.,
Svoboda P., Lappalainen A., Könighofer E., Mirgorodskaya E., Nordén R., Morini F., Rosenbaum W.,
Růžek D., Anastasina M., Merits A., Butcher S.J., Nilsson E., Överby A.K. (2025) The influence of the pre-membrane and envelope proteins on structure, pathogenicity and tropism of tick-borne encephalitis virus. Journal of Virology
99
: e00870-25. DOI: 10.1128/jvi.00870-25
|
Holoubek J.,
Salát J., Kotouček J., Kastl T.,
Vancová M., Huvarová I., Bednář P., Bednářová K.,
Růžek D., Renčiuk D.,
Eyer L. (2024) Antiviral activity of porphyrins and porphyrin-like compounds against tick-borne encephalitis virus: blockage of the viral entry/fusion machinery by photosensitization-mediated destruction of the viral envelope Antiviral Research
221
: 105767. DOI: 10.1016/j.antiviral.2023.105767
|
Holoubek J.,
Salát J., Kotouček J., Kastl T.,
Vancová M., Huvarová I., Bednář P., Bednářová K.,
Růžek D., Renčiuk D.,
Eyer L. (2023) Antiviral activity of porphyrins and porphyrin-like compounds against tick-borne encephalitis virus: blockage of the viral entry/fusion machinery by photosensitization-mediated destruction of the viral envelope Antiviral Research
221
: 105767. DOI: 10.1016/j.antiviral.2023.105767
|
Kakuk B., Dörmő Á., Csabai Z., Kemenesi G., Holoubek J.,
Růžek D., Dani V.É., Dénes B., Torma G., Jakab F., Tóth G.E., Földes F.V., Zana B., Lanszki Z., Harangozó Á., Fülöp Á., Gulyás G., Mizik M., Kiss A.A., Tombácz D., Boldogkői Z. (2023) In-depth temporal transcriptome profiling of monkeypox and host cells using Nanopore sequencing Scientific Data
10
: 262. DOI: 10.1038/s41597-023-02149-4
|
Mikhnovets I.E., Holoubek J., Panina I.S., Kotouček J., Gvozdev D.A., Chumakov D.A., Krasilnikov M.S., Zhitlov M.Y., Gulyak E.L., Chistov A.A., Nikitin T.D., Korshun V.A., Efremov R.G., Alferova V.A.,
Růžek D.,
Eyer L., Ustinov A.V. (2023) Alkyl derivatives of perylene photosensitizing antivirals: towards understanding the influence of lipophilicity International Journal of Molecular Sciences
24
: 16483. DOI: 10.3390/ijms242216483
|
Straková P., Bednar P., Kotouček J., Holoubek J., Fořtová A.,
Svoboda P., Štefánik M., Huvarová I., Simeckova P., Korshun V.A.,
Růžek D.,
Eyer L. (2023) Antiviral activity of singlet oxygen-photogenerating perylene compounds against SARS-CoV-2: Interaction with the viral envelope and photodynamic virion inactivation Virus Research
334
: 199158. DOI: 10.1016/j.virusres.2023.199158
|
Holoubek J., Bednářová K.,
Haviernik J., Huvarová I., Dvořáková Z., Černý J., Outlá M.,
Salát J., Konkol'ová E., Boura E.,
Růžek D. (2022) Guanine quadruplexes in the RNA genome of the tick-borne encephalitis virus: their role as a new antiviral target and in virus biology Nucleic Acids Research
50
: 4574–4600. DOI: 10.1093/nar/gkac225
|