Publications

Total found: 33 records
del Campo J., Carlos-Oliveira M., Čepička I., Hehenberger E., Horák A., Karnkowska A., Kolísko M., Lara E., Lukeš J., Pánek T., Piwosz K., Richter D.J., Škaloud P., Šuťák R., Tachezy J., Hampl V. (2024) The protist cultural renaissance Trends in Microbiology 32: 128-131.
DOI: 10.1016/j.tim.2023.11.010
Lukeš J., Čepička I., Kolísko M. (2024) Evolution: No end in sight for novel incredible (heterotrophic) protists Current Biology 34: R53–R74.
DOI: 10.1016/j.cub.2023.10.065

Documents to download:
Lukes_2024_CurrBiol (pdf)
Rotterová J., Pánek T., Salomaki E., Kotyk M., Táborský P., Kolísko M., Čepička I. (2024) Single cell transcriptomics reveals UAR codon reassignment in Palmarella salina (Metopida, Armophorea) and confirms Armophorida belongs to APM clade Molecular Phylogenetics and Evolution 191: 107991.
DOI: 10.1016/j.ympev.2023.107991
Hehenberger E., Boscaro V., James E., Hirakawa Y., Trznadel M., Mtawali M., Fiorito R., del Campo J., Karnkowska A., Kolísko M., Irwin N.A.T., Mathur V., Scheffrahn R., Keeling P. (2023) New Parabasalia symbionts Snyderella spp. and Daimonympha gen. nov. from South American Rugitermes termites and the parallel evolution of a cell with a rotating "head" Journal of Eukaryotic Microbiology 70: e12987.
DOI: 10.1111/jeu.12987
Mathur V., Salomaki E., Wakeman K.C., Na I., Kwong W.K., Kolísko M., Keeling P. (2023) Reconstruction of plastid proteomes of apicomplexans and close relatives reveals the major evolutionary outcomes of cryptic plastids Molecular Biology and Evolution 40: msad002.
DOI: 10.1093/molbev/msad002
Obiol A., López-Escardó D., Salomaki E., Wisniewska M., Forn I., Sà E., Vaqué D., Kolísko M., Massana R. (2023) Gene expression dynamics of natural assemblages of heterotrophic flagellates during bacterivory Microbiome 11: 134.
DOI: 10.1186/s40168-023-01571-5
Lax G., Kolísko M., Eglit Y., Lee W.J., Yubuki N., Karnkowska A., Leander B., Burger G., Keeling J., Simpson A. (2021) Multigene phylogenetics of euglenids based on single-cell transcriptomics of diverse phagotrophs Molecular Phylogenetics and Evolution 159: 107088.
DOI: 10.1016/j.ympev.2021.107088
Salas-Leiva D.E., Tromer E.C., Curtis B., Jerlström-Hultqvist J., Kolísko M., Yi Z., Salas-Leiva J.S., Gallot-Lavallée L., Williams S.K., Kops G., Archibald J. M., Simpson A., Roger A. (2021) Genomic analysis finds no evidence of canonical eukaryotic DNA processing complexes in a free-living protist Nature Communications 12: 6003.
DOI: 10.1038/s41467-021-26077-2
Salomaki E., Terpis K.X., Rueckert S., Kotyk M., Varadínová Z.K., Čepička I., Lane C., Kolísko M. (2021) Gregarine single-cell transcriptomics reveals differential mitochondrial remodeling and adaptation in apicomplexans BMC Biology 19: 77.
DOI: 10.1186/s12915-021-01007-2
Singh R.A., Boscaro V., James E., Karnkowska A., Kolísko M., Gavelis G.S., Okamoto N., del Campo J., Fiorito R., Hehenberger E., Irwin N.A.T., Mathur V., Scheffrahn R., Keeling P. (2021) Characterization of new cristamonad species from kalotermitid termites including a novel genus, Runanympha Scientific Reports 11: 7270.
DOI: 10.1038/s41598-021-86645-w
Stairs C.W., Táborský P., Salomaki E., Kolísko M., Pánek T., Eme L., Hradilová M., Vlček Č., Jerlström-Hultqvist J., Roger A., Čepička I. (2021) Anaeramoebae are a divergent lineage of eukaryotes that shed light on the transition from anaerobic mitochondria to hydrogenosomes Current Biology 31: 5605-5612.e5.
DOI: 10.1016/j.cub.2021.10.010
Tice A.K., Žihala D., Pánek T., Jones R.E., Salomaki E., Nenarokov S., Burki F., Eliáš M., Eme L., Roger A., Rokas A., Shen X.X., Strassert J., Kolísko M., Brown M.M. (2021) PhyloFisher: A phylogenomic package for resolving eukaryotic relationships PLoS Biology 19: e3001365.
DOI: 10.1371/journal.pbio.3001365
Alama Bermejo G., Myer E., Atkinson S.D., Holzer A., Wisniewska M., Kolísko M., Bartholomew J. (2020) Transcriptome-wide comparisons and virulence gene polymorphisms of host-associated genotypes of the cnidarian parasite Ceratonova shasta in salmonids. Genome Biology and Evolution 12: 1258–1276.
DOI: 10.1093/gbe/evaa109
Kolísko M., Flegontova O., Karnkowska A., Lax G., Maritz J.M., Pánek T., Táborský P., Carlton J.M., Čepička I., Horák A., Lukeš J., Simpson A., Tai V. (2020) EukRef-excavates: seven curated SSU ribosomal RNA gene databases Database 2020: baaa080.
DOI: 10.1093/database/baaa080

Documents to download:
Kolisko_2020_Database (pdf)
Lhotská Z., Jirků M., Hložková O., Brožová K., Jirsová D., Stensvold C., Kolísko M., Jirků-Pomajbíková K. (2020) A Study on the Prevalence and Subtype Diversity of the Intestinal Protist Blastocystis sp. in a Gut-Healthy Human Population in the Czech Republic Frontiers in Cellular and Infection Microbiology 10: 544335.
DOI: 10.3389/fcimb.2020.544335
Rotterová J., Salomaki E., Pánek T., Bourland W., Žihala D., Táborský P., Edgcomb V., Beinart R.A., Kolísko M., Čepička I. (2020) Genomics of new ciliate lineages provides insight into the evolution of obligate anaerobiosis Current Biology 30: 2037-2050.e6.
DOI: 10.1016/j.cub.2020.03.064
Salomaki E., Eme L., Brown M.W., Kolísko M. (2020) Response to Preuss and Zuccarello (2020): biological definitions that can be unambiguously applied for red algal parasites Journal of Phycology 56: 833-835.
DOI: 10.1111/jpy.12987
Adl S.M., Bass D., Lane C., Lukeš J., Schoch C., Smirnov A., Agatha S. , Berney C., Brown M.W., Burki F., Cárdenas P., Čepička I., Chistyakova L., del Campo J., Dunthorn M., Edvardsen B., Eglit Y., Guillou L. , Hampl V., Heiss A.A., Hoppenrath M., James T.Y., Karnowska J., Karpov S., Kim E., Kolísko M., Kudryavtsev A., Lahr D.J.G., Lara E., Le Gall L., Lynn D., Mann D. G., Massana R., Mitchell E., Morrow Ch., Pawlowski J., Powel M.J., Richter D.J., Rueckert S., Shadwick L., Shimano S., Spiegel F., Torruella G., Youssef N., Zlatogursky V., Zhang Q. (2019) Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes Journal of Eukaryotic Microbiology 66: 4–119.
DOI: 10.1111/jeu.12691

Documents to download:
Adl et al. 2019 (pdf)
Mathur V., Kolísko M., Hehenberger E., Irwin N.A.T., Leander B., Kristmundsson Á., Freeman M., Keeling P. (2019) Multiple Independent Origins of Apicomplexan-Like Parasites Current Biology 29: 2936–2941.e5.
DOI: 10.1016/j.cub.2019.07.019
Treitli S.C., Kolísko M., Husník F., Keeling P., Hampl V. (2019) Revealing the metabolic capacity of Streblomastix strix and its bacterial symbionts using single-cell metagenomics. Proceedings of the National Academy of Sciences of the United States of America 39: 19675–19684.
DOI: 10.1073/pnas.1910793116

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