Publications

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Total found: 446 records
Gerasimov E.S., Afonin D.A., Škodová-Sveráková I., Saura A., Trusina N., Gahura O., Zakharova A., Butenko A., Baráth P., Horváth A., Opperdoes F.R., Pérez-Morgai D., Zimmer S., Lukeš J., Yurchenko V. (2025) Evolutionary divergent kinetoplast genome structure and RNA editing patterns in the trypanosomatid Vickermania. Proceedings of the National Academy of Sciences of the United States of America 122: e2426887122.
DOI: 10.1073/pnas.2426887122

Documents to download:
Gerasimov_2025_PNAS (pdf)
Gray M., Valach M., Sarrasin M., Le Sieur F.-A., Lukeš J., Burger G. (2025) The mitochondrial proteome of diplonemids: from conventional pathways to eccentric RNA editing and transcript processing. BMC Genomics 26: 1099.
DOI: 10.1186/s12864-025-12233-1

Documents to download:
Gray_2025_BMCGenomics (pdf)
Hammond M., Iorillo O., Faktorová D., Svobodová M., Akiyoshi B., Licknack T., Poh Y.P., Lukeš J., Wideman J.G. (2025) Subcellular proteomics of the protist Paradiplonema papillatum reveals the digestive capacity of the cell membrane and the plasticity of peroxisomes across euglenozoans. PloS Biology 23: e3003319.
DOI: 10.1371/journal.pbio.3003319

Documents to download:
Hammond_2025_PlosBiol (pdf)
Lukeš J., Čapková Pavlíková Z., Yurchenko V., Paris Z., Valášek L.S. (2025) Blastocrithidia—A Genetic Alien from the Planet Earth Cold Spring Harbor Perspectives in Biology 17: a041868.
DOI: 10.1101/cshperspect.a041868

Documents to download:
Lukes_2025_CSHPiB (pdf)
Lukeš J., Eliáš M., Kachale A., van der Gulik P.T.S., Speijer D. (2025) Natural and artificial variations of the standard genetic code. Current Biology 35: R1104–R1126.
DOI: 10.1016/j.cub.2025.09.071

Documents to download:
Lukes_2025_CurrBiol (pdf)
Pendlebury M., Lukeš J., Hammond M. (2025) You can go your own way: The targeting signals of trypanosomatid parasites. PloS Pathogens 21: e1013326.
DOI: 10.1371/journal.ppat.1013326

Documents to download:
Pendlebury_2025_PlosPathogens (pdf)
Schoenle A., Francis O., Archibald J., Burki F., de Vries J., Dumack K., Eme L., Florent I., Hehenberger E., Hoffmeyer T.T., Irisarri I., Lara E., Leger M.M., Lukeš J., Massana R., Mathur V., Nitsche F. , Strassert J., Worden A., Yurchenko V., del Campo J., Waldvogel A.M. (2025) Protist genomics: key to understanding eukaryotic evolution. Trends in Genetics 41: 868-882.
DOI: 10.1016/j.tig.2025.05.004

Documents to download:
Schoenle_2025_TrendsGenetics (pdf)
Świrski M.I., Tierney J.A.S., Albà M.M., Andreev D.E., Aspden J.L., Atkins J.F., Bassani-Sternberg M., Berry M.J., Biffo S., Boris-Lawrie K., Borodovsky M., Brierley I., Brook M., Lukeš J., Yurchenko V., Zagrovic B., Valen E., Baranov P.V. (2025) Translon: a single term for translated regions. Nature Methods 22: 2002–2006.
DOI: 10.1038/s41592-025-02810-3

Documents to download:
Swirski_2025_NatMet (pdf)
Tashyreva D., Votýpka_LRP J., Yabuki A., Horák A., Lukeš J. (2025) Description of new diplonemids (Diplonemea, Euglenozoa) and their endosymbionts: Charting the morphological diversity of these poorly known heterotrophic flagellates Protist 177: 126090.
DOI: 10.1016/j.protis.2025.126090

Documents to download:
Tashyreva_2025_Protist (pdf)
Thakur P.K., Butenko A., Karásek F., Svobodová M., Faktorová D., Pavlisková H., Varga V., Horák A., Lukeš J., Staněk D. (2025) Splice site diversity and abundance of non-canonical introns in diplonemids (Diplonemea, Euglenozoa). RNA 31: 1826–1840.
DOI: 10.1261/rna.080641.125

Documents to download:
Thakur_2025_RNA (pdf)
Votýpka_LRP J., Bulantová J., Lukeš J. (2025) Pthirus pubis (pubic louse) Trends in Parasitology 41: 1062–1063.
DOI: 10.1016/j.pt.2025.05.012

Documents to download:
Votypka_2025_TrendsParasitol (pdf)
Votýpka_LRP J., Jirků M., Spodareva V., Režnarová J., Poloprutská K., Pajer P., Milner D., Richards T., Yurchenko V., Ibáñez R., Lukeš J., Kostygov A. (2025) Trypanosomes in Neotropical frogs: unveiling hidden megadiversity and complex host-parasite patterns. Open Biology 15: 250190.
DOI: 10.1098/rsob.250190

Documents to download:
Votypka_2025_OpenBiol (pdf)
Wang J.-F., Bi Y.-X., Hammond M., Lukeš J., Lai D.-H., Lun Z.-R. (2025) Kinetoplast DNA structure, RNA editing patterns and small respiratory Complex I in Trypanosoma musculi. Communications Biology 8: 1544.
DOI: 10.1038/s42003-025-08883-2

Documents to download:
Wang_2025_CommBiol (pdf)
Záhonová K., Füssy Z., Albanaz A.T.S., Butenko A., Kachale A., Kraeva N., Galan A., Zakharova A., Stojanova B., Kostygov A., Votýpka_LRP J., Spodareva V.V., Malysheva M., Frolov A., Rogozin I.B., Paris Z., Valášek L.S., Yurchenko V., Lukeš J. (2025) Comparative genomic analysis of trypanosomatid protists illuminates an extensive change in the nuclear genetic code. mBio 28: e0088525.
DOI: 10.1128/mbio.00885-25

Documents to download:
Zahonova_2025_MBio (pdf)
Záhonová K., Lukeš J., Dacks J. (2025) Diplonemid protists possess exotic endomembrane machinery, impacting models of membrane trafficking in modern and ancient eukaryotes. Current Biology 35: 1508-1520.e2.
DOI: 10.1016/j.cub.2025.02.032

Documents to download:
Zahonova_2025_CurrBiol (pdf)
Afonin D.A., Gerasimov E.S., Škodová-Sveráková I., Záhonová K., Gahura O., Albanaz A.T.S., Myšková E., Bykova A., Paris Z., Lukeš J., Opperdoes F.R., Horváth A., Zimmer S., Yurchenko V. (2024) Blastocrithidia nonstop mitochondrial genome and its expression are remarkably insulated from nuclear codon reassignment Nucleic Acids Research 50: 3870–3885.
DOI: 10.1093/nar/gkae168

Documents to download:
Afonin_2024_NAR (pdf)
Aguado M.E., Carvalho S., Valdés-Tresanco M.E., Lin D., Padilla-Mejia N.E., Corpas-Lopez V., Tesařová M., Lukeš J., Gray D.W., González-Bacerio J., Wyllie S., Field M. (2024) Identification and Validation of Compounds Targeting Leishmania major Leucyl-Aminopeptidase M17 ACS Infectious Diseases 10: 2002−2017.
DOI: 10.1021/acsinfecdis.4c00009

Documents to download:
Aguado_2024 (pdf)
Bartošová-Sojková P., Butenko A., Richtová J., Fiala I., Oborník M., Lukeš J. (2024) Inside the host: understanding the evolutionary trajectories of intracellular parasitism ANNUAL REVIEW OF MICROBIOLOGY 78: 3.1–3.21.
DOI: 10.1146/annurev-micro-041222-025305

Documents to download:
Bartosova-Sojkova_2024_AnnRep (pdf)
Benz C., Raas M.W.D., Tripathi P., Faktorová D., Tromer E.C., Akiyoshi B., Lukeš J. (2024) On the possibility of yet a third kinetochore system in the protist phylum Euglenozoa mBio 15: 12.
DOI: 10.1128/mbio.02936-24

Documents to download:
Benz_2024_mBIO (pdf)
Butenko A., Lukeš J., Speijer D., Weideman J.G. (2024) Mitochondrial genomes revisited: Why dodifferent lineages retain different genes? BMC Biology 22: 15.
DOI: 10.1186/s12915-024-01824-1

Documents to download:
Butenko_2024_BMCBiol (pdf)
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