- Evolutionary Parasitology (Martin Kolísko)
- Molecular Parasitology (Alena Panicucci Zíková)
- Veterinary and Medical Parasitology (Martin Kváč)
-
Disease Vectors and Pathogens (Jan Perner)
- Laboratory of Arbovirology (Martin Palus)
- Laboratory of Enzymology of Ticks and Tick-borne Pathogens (Daniel Sojka)
- Laboratory of Molecular Biology and Physiology of Mosquitoes (Marcela Nouzová)
- Laboratory of Molecular Biology of Ticks (Jan Perner)
- Laboratory of Molecular Ecology of Vectors and Pathogens (Ryan O.M. Rego)
- Aquatic Parasitology (Ivan Fiala)
- Section of Supporting Facilities
- Folia Parasitologica, international journal
- Laboratory of Electron Microscopy
