List of publications

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Total found: 546 records
Lukeš J., Eliáš M., Kachale A., van der Gulik P.T.S., Speijer D. (2025) Natural and artificial variations of the standard genetic code. Current Biology 35: R1104–R1126.
DOI: 10.1016/j.cub.2025.09.071

Documents to download:
Lukes_2025_CurrBiol (pdf)
Matsuo L., Novák Vanclová A.M.G., Pomiankowski A., Lane N., Dacks J. (2025) Eukaryotic recombinases duplicated after divergence from known Asgard archaeal RadA: implications for the evolution of sex during eukaryogenesis. Genome Biology and Evolution 17: evaf240.
DOI: 10.1093/gbe/evaf240
Nearman A., Butenko A., Evans J.D., Palmer-Young E.C. (2025) Chromosome-level genome assembly of trypanosomatid parasite Lotmaria passim links chromosome duplication and divergence with infection of honey bees. BMC Genomics 26: 1083.
DOI: 10.1186/s12864-025-12082-y
Novák Vanclová A.M.G., Jackson C.L., Dacks J. (2025) Eukaryote-wide distribution of a family of longin domain-containing GAP complexes for small GTPases. Traffic 26: e70016.
DOI: 10.1111/tra.70016

Documents to download:
Novak_Vanclov_2025_Traffic (pdf)
Pendlebury M., Lukeš J., Hammond M. (2025) You can go your own way: The targeting signals of trypanosomatid parasites. PloS Pathogens 21: e1013326.
DOI: 10.1371/journal.ppat.1013326

Documents to download:
Pendlebury_2025_PlosPathogens (pdf)
Ribeiro P., Butenko A., Linke D., Ghanavi H.R., Meier J.I., Wahlberg N., Matos Maravi P. F. (2025) Pervasive horizontal transmission of Wolbachia in natural populations of closely related and widespread tropical skipper butterflies BMC Microbiology 22: 5.
DOI: 10.1186/s12866-024-03719-1

Documents to download:
Ribeiro_2025_BMCMicrobiol (pdf)
Roucheray S., Stastny D., Kaur H., Tahotna D., Dacks J., Griac P., Richard D. (2025) Characterization of a phosphoinositide-binding protein containing a PHOX homology domain in the malaria parasite Plasmodium falciparum. Scientific Reports 15: 36867.
DOI: 10.1038/s41598-025-20974-y

Documents to download:
Roucheray_2025_SciRep (pdf)
Schoenle A., Francis O., Archibald J., Burki F., de Vries J., Dumack K., Eme L., Florent I., Hehenberger E., Hoffmeyer T.T., Irisarri I., Lara E., Leger M.M., Lukeš J., Massana R., Mathur V., Nitsche F. , Strassert J., Worden A., Yurchenko V., del Campo J., Waldvogel A.M. (2025) Protist genomics: key to understanding eukaryotic evolution. Trends in Genetics 41: 868-882.
DOI: 10.1016/j.tig.2025.05.004

Documents to download:
Schoenle_2025_TrendsGenetics (pdf)
Sheikh S., Turpin Knotková B., Benz C., Eliáš M., Bílý T., Bondar A., Tesařová M., Stříbrná E., Heller J., Meinecke M., Hashimi H. (2025) The core MICOS complex subunit Mic60 has been substituted by two cryptic mitofilin-containing proteins in Euglenozoa. Molecular Biology and Evolution 42: msaf289.
DOI: 10.1093/molbev/msaf289
Świrski M.I., Tierney J.A.S., Albà M.M., Andreev D.E., Aspden J.L., Atkins J.F., Bassani-Sternberg M., Berry M.J., Biffo S., Boris-Lawrie K., Borodovsky M., Brierley I., Brook M., Lukeš J., Yurchenko V., Zagrovic B., Valen E., Baranov P.V. (2025) Translon: a single term for translated regions. Nature Methods 22: 2002–2006.
DOI: 10.1038/s41592-025-02810-3

Documents to download:
Swirski_2025_NatMet (pdf)
Tashyreva D., Votýpka J., Yabuki A., Horák A., Lukeš J. (2025) Description of new diplonemids (Diplonemea, Euglenozoa) and their endosymbionts: Charting the morphological diversity of these poorly known heterotrophic flagellates Protist 177: 126090.
DOI: 10.1016/j.protis.2025.126090

Documents to download:
Tashyreva_2025_Protist (pdf)
Thakur P.K., Butenko A., Karásek F., Svobodová M., Faktorová D., Pavlisková H., Varga V., Horák A., Lukeš J., Staněk D. (2025) Splice site diversity and abundance of non-canonical introns in diplonemids (Diplonemea, Euglenozoa). RNA 31: 1826–1840.
DOI: 10.1261/rna.080641.125

Documents to download:
Thakur_2025_RNA (pdf)
Vargová R., Chevreau R., Alves M., Courbin C., Terry K., Legrand P., Eliáš M., Ménétrey J., Dacks J., Jackson C.L. (2025) The Asgard archaeal origins of arf family GTPases involved in eukaryotic organelle dynamics Nature Microbiology 10: 495–508 .
DOI: 10.1038/s41564-024-01904-6
Votýpka J., Bulantová J., Lukeš J. (2025) Pthirus pubis (pubic louse) Trends in Parasitology 41: 1062–1063.
DOI: 10.1016/j.pt.2025.05.012

Documents to download:
Votypka_2025_TrendsParasitol (pdf)
Votýpka J., Jirků M., Spodareva V., Režnarová J., Poloprutská K., Pajer P., Milner D., Richards T., Yurchenko V., Ibáñez R., Lukeš J., Kostygov A. (2025) Trypanosomes in Neotropical frogs: unveiling hidden megadiversity and complex host-parasite patterns. Open Biology 15: 250190.
DOI: 10.1098/rsob.250190

Documents to download:
Votypka_2025_OpenBiol (pdf)
Wang J.-F., Bi Y.-X., Hammond M., Lukeš J., Lai D.-H., Lun Z.-R. (2025) Kinetoplast DNA structure, RNA editing patterns and small respiratory Complex I in Trypanosoma musculi. Communications Biology 8: 1544.
DOI: 10.1038/s42003-025-08883-2

Documents to download:
Wang_2025_CommBiol (pdf)
Wiredu-Boakye D., Higgins L., Gahura O., Butenko A., Leonard G. , Freeman M., Kristmundsson Á., Moore K., Harrison J.W., Mac Donald S., Yurchenko V., Williams B.A.P., Chahwan R. (2025) Evolutionary Insights into the Length Variation of DNA Damage Response Proteins Across Eukaryotes Open Access Genome Biology and Evolution 17: evaf089.
DOI: 10.1093/gbe/evaf089

Documents to download:
Wiredu-Boakye 2025 GBE (pdf)
Záhonová K., Albanaz A.T.S., Butenko A., Kachale A., Kraeva N., Galan A., Zakharova A., Stojanova B., Votýpka J., Kostygov A., Spodareva V.V., Malysheva M., Frolov A., Rogozin I.B., Paris Z., Valášek L.S., Yurchenko V., Lukeš J. (2025) Comparative genomic analysis of trypanosomatid protists illuminates an extensive change in the nuclear genetic code. mBio 28: e0088525.
DOI: 10.1128/mbio.00885-25

Documents to download:
Zahonova_2025_MBio (pdf)
Záhonová K., Kaur H., Furgason C.C., Smirnova A.V., Dunfield P.F., Dacks J. (2025) Comparative analysis of protist communities in oilsands tailings using amplicon sequencing and metagenomics Environmental Microbiology 27: e70029.
DOI: 10.1111/1462-2920.70029

Documents to download:
Zahonova_2025_EnvMicrob (pdf)
Záhonová K., Lukeš J., Dacks J. (2025) Diplonemid protists possess exotic endomembrane machinery, impacting models of membrane trafficking in modern and ancient eukaryotes. Current Biology 35: 1508-1520.e2.
DOI: 10.1016/j.cub.2025.02.032

Documents to download:
Zahonova_2025_CurrBiol (pdf)
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