List of publications

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Total found: 554 records
Gerasimov E.S., Afonin D.A., Škodová-Sveráková I., Saura A., Trusina N., Gahura O., Zakharova A., Butenko A., Baráth P., Horváth A., Opperdoes F.R., Pérez-Morgai D., Zimmer S., Lukeš J., Yurchenko V. (2025) Evolutionary divergent kinetoplast genome structure and RNA editing patterns in the trypanosomatid Vickermania. Proceedings of the National Academy of Sciences of the United States of America 122: e2426887122.
DOI: 10.1073/pnas.2426887122

Documents to download:
Gerasimov_2025_PNAS (pdf)
Gray M., Valach M., Sarrasin M., Le Sieur F.-A., Lukeš J., Burger G. (2025) The mitochondrial proteome of diplonemids: from conventional pathways to eccentric RNA editing and transcript processing. BMC Genomics 26: 1099.
DOI: 10.1186/s12864-025-12233-1

Documents to download:
Gray_2025_BMCGenomics (pdf)
Grech J., Shinde A.P., Periz J., Singer M., Gras S., Forné I., Klingl A., Dacks J., Jimenez-Ruiz E., Meissner M. (2025) Tepsin and AP4 mediate transport from the trans-Golgi to the plant-like vacuole in toxoplasma. Journal of Cell Biology 224: e202312109.
DOI: 10.1083/jcb.202312109

Documents to download:
Grech_2025_JCB (pdf)
Hammond M., Iorillo O., Faktorová D., Svobodová M., Akiyoshi B., Licknack T., Poh Y.P., Lukeš J., Wideman J.G. (2025) Subcellular proteomics of the protist Paradiplonema papillatum reveals the digestive capacity of the cell membrane and the plasticity of peroxisomes across euglenozoans. PloS Biology 23: e3003319.
DOI: 10.1371/journal.pbio.3003319

Documents to download:
Hammond_2025_PlosBiol (pdf)
Hashimi H. (2025) Cell biology: A new dynamin superfamily protein remodels mitochondrial dynamics Current Biology 35: R218-R221.
DOI: 10.1016/j.cub.2025.01.069

Documents to download:
Hashimi_2025_CurrBiol (pdf)
Hashimi H., Gahura O., Pánek T. (2025) Bringing together but staying apart: decisive differences in animal and fungal mitochondrial inner membrane fusion Biological Reviews 100: 920-935.
DOI: 10.1111/brv.13168

Documents to download:
Hashimi 2024 BiolRevCambPhilosSoc (pdf)
Lazaridis I., Patterson N., Anthony D., Vyazov L., Fournier R., Ringbauer H., Olalde I., Khokhlov A.A., Kitov E.P., Flegontov P., Flegontova O., Szécsényi-Nagy A., Palamara P.F., Mallick S., Rohland N., Pinhasi R., Reich D. (2025) The genetic origin of the Indo-Europeans Nature 639: 132–142.
DOI: 10.1038/s41586-024-08531-5
Lukeš J., Čapková Pavlíková Z., Yurchenko V., Paris Z., Valášek L.S. (2025) Blastocrithidia—A Genetic Alien from the Planet Earth Cold Spring Harbor Perspectives in Biology 17: a041868.
DOI: 10.1101/cshperspect.a041868

Documents to download:
Lukes_2025_CSHPiB (pdf)
Lukeš J., Eliáš M., Kachale A., van der Gulik P.T.S., Speijer D. (2025) Natural and artificial variations of the standard genetic code. Current Biology 35: R1104–R1126.
DOI: 10.1016/j.cub.2025.09.071

Documents to download:
Lukes_2025_CurrBiol (pdf)
Matsuo L., Novák Vanclová A.M.G., Pomiankowski A., Lane N., Dacks J. (2025) Eukaryotic recombinases duplicated after divergence from known Asgard archaeal RadA: implications for the evolution of sex during eukaryogenesis. Genome Biology and Evolution 17: evaf240.
DOI: 10.1093/gbe/evaf240
Nearman A., Butenko A., Evans J.D., Palmer-Young E.C. (2025) Chromosome-level genome assembly of trypanosomatid parasite Lotmaria passim links chromosome duplication and divergence with infection of honey bees. BMC Genomics 26: 1083.
DOI: 10.1186/s12864-025-12082-y
Novák Vanclová A.M.G., Jackson C.L., Dacks J. (2025) Eukaryote-wide distribution of a family of longin domain-containing GAP complexes for small GTPases. Traffic 26: e70016.
DOI: 10.1111/tra.70016

Documents to download:
Novak_Vanclov_2025_Traffic (pdf)
Pendlebury M., Lukeš J., Hammond M. (2025) You can go your own way: The targeting signals of trypanosomatid parasites. PloS Pathogens 21: e1013326.
DOI: 10.1371/journal.ppat.1013326

Documents to download:
Pendlebury_2025_PlosPathogens (pdf)
Ribeiro P., Butenko A., Linke D., Ghanavi H.R., Meier J.I., Wahlberg N., Matos Maravi P. F. (2025) Pervasive horizontal transmission of Wolbachia in natural populations of closely related and widespread tropical skipper butterflies BMC Microbiology 22: 5.
DOI: 10.1186/s12866-024-03719-1

Documents to download:
Ribeiro_2025_BMCMicrobiol (pdf)
Roucheray S., Stastny D., Kaur H., Tahotna D., Dacks J., Griac P., Richard D. (2025) Characterization of a phosphoinositide-binding protein containing a PHOX homology domain in the malaria parasite Plasmodium falciparum. Scientific Reports 15: 36867.
DOI: 10.1038/s41598-025-20974-y

Documents to download:
Roucheray_2025_SciRep (pdf)
Schoenle A., Francis O., Archibald J., Burki F., de Vries J., Dumack K., Eme L., Florent I., Hehenberger E., Hoffmeyer T.T., Irisarri I., Lara E., Leger M.M., Lukeš J., Massana R., Mathur V., Nitsche F. , Strassert J., Worden A., Yurchenko V., del Campo J., Waldvogel A.M. (2025) Protist genomics: key to understanding eukaryotic evolution. Trends in Genetics 41: 868-882.
DOI: 10.1016/j.tig.2025.05.004

Documents to download:
Schoenle_2025_TrendsGenetics (pdf)
Sheikh S., Turpin Knotková B., Benz C., Eliáš M., Bílý T., Bondar A., Tesařová M., Stříbrná E., Heller J., Meinecke M., Hashimi H. (2025) The core MICOS complex subunit Mic60 has been substituted by two cryptic mitofilin-containing proteins in Euglenozoa. Molecular Biology and Evolution 42: msaf289.
DOI: 10.1093/molbev/msaf289
Świrski M.I., Tierney J.A.S., Albà M.M., Andreev D.E., Aspden J.L., Atkins J.F., Bassani-Sternberg M., Berry M.J., Biffo S., Boris-Lawrie K., Borodovsky M., Brierley I., Brook M., Lukeš J., Yurchenko V., Zagrovic B., Valen E., Baranov P.V. (2025) Translon: a single term for translated regions. Nature Methods 22: 2002–2006.
DOI: 10.1038/s41592-025-02810-3

Documents to download:
Swirski_2025_NatMet (pdf)
Tashyreva D., Votýpka J., Yabuki A., Horák A., Lukeš J. (2025) Description of new diplonemids (Diplonemea, Euglenozoa) and their endosymbionts: Charting the morphological diversity of these poorly known heterotrophic flagellates Protist 177: 126090.
DOI: 10.1016/j.protis.2025.126090

Documents to download:
Tashyreva_2025_Protist (pdf)
Thakur P.K., Butenko A., Karásek F., Svobodová M., Faktorová D., Pavlisková H., Varga V., Horák A., Lukeš J., Staněk D. (2025) Splice site diversity and abundance of non-canonical introns in diplonemids (Diplonemea, Euglenozoa). RNA 31: 1826–1840.
DOI: 10.1261/rna.080641.125

Documents to download:
Thakur_2025_RNA (pdf)
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