List of publications

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Total found: 548 records
Jerlström-Hultqvist J., Gallot-Lavallée L., Salas-Leiva D.E., Curtis B., Záhonová K., Čepička I., Stairs C.W., Pipaliya S., Dacks J., Archibald J., Roger A. (2024) A unique symbiosome in an anaerobic single-celled eukaryote Nature Communications 15: 9726.
DOI: 10.1038/s41467-024-54102-7

Documents to download:
Jerlstrom-Hultqvist_2024_NatComm (pdf)
Jiménez-Mejías P., Manzano S., Gowda V., Krell F., Lin M.Y., Martín-Bravo S., Martín-Torrijos L., Nieto Feliner G., Mosyakin S.L., Naczi R.F.C., Acedo C., Álvarez I., Crisci J.V., Luceño Garcés M., Manning J., Moreno Saiz J.C., Muasya A.M., Riina R., Meseguer A.S., Sánchez-Mata D., Lukeš J., 1543 additional coauthors (2024) Protecting stable biological nomenclatural systems enables universal communication: A collective international appeal BioScience 74: 467–472.
DOI: 10.1093/biosci/biae043

Documents to download:
Jiménez-Mejías_2024_BioScience (pdf)
Klinger C.M., Jimenez-Ruiz E., Mourier T., Klingl A., Lemgruber L., Pain A., Dacks J., Meissner M. (2024) Evolutionary analysis identifies a Golgi pathway and correlates lineage-specific factors with endomembrane organelle emergence in apicomplexans. Cell Reports 43: 113740.
DOI: 10.1016/j.celrep.2024.113740
Konupková A., Tomečková L., Záhonová K., Oborník M., Füssy Z. (2024) CHAPTER: Easier Lost than Found? What We Know about Plastid Genome Reduction In: S.D. Schwartzbach, P.G. Kroth, M. Oborník (Eds.) Endosymbiotic Organelle Acquisition. Springer, Cham: pp. 147–181.
DOI: 10.1007/978-3-031-57446-7_5
Kostygov A. , Skýpalová K., Kraeva N., Kalita E., McLeod C., Yurchenko V., Field M., Lukeš J., Butenko A. (2024) Comprehensive analysis of the Kinetoplastea intron landscape reveals a novel intron-containing gene and the first exclusively trans-splicing eukaryote BMC Biology 22: 281.
DOI: 10.1186/s12915-024-02080-z

Documents to download:
Kostygov_2024_BMCBiol (pdf)
Kostygov A., Albanaz A.T.S., Butenko A., Gerasimov E.S., Lukeš J., Yurchenko V. (2024) Phylogenetic framework to explore trait evolution in Trypanosomatidae Trends in Parasitology 40: 2.
DOI: 10.1016/j.pt.2023.11.009

Documents to download:
Kostygov_2024_TrendsParasitol (pdf)
Kostygov A., Chmelová L., Reichl J., Jászayová A., Votýpka J., Fuehrer H.P., Yurchenko V. (2024) Parasites of firebugs in Austria with focus on the "micro"-diversity of the cosmopolitan trypanosomatid Leptomonas pyrrhocoris Parasitology Research 123: 27.
DOI: 10.1007/s00436-023-08080-2

Documents to download:
Kostygov_2024_ParRes (pdf)
Lukeš J. (2024) Francisco Ayala and the passion for parasitic protists Razón y Fe 288: 89–103.
DOI: 10.14422/ryf.vol288.i1464.y2024.006

Documents to download:
Lukes_2024_RazonYFe (pdf)
Lukeš J., Čepička I., Kolísko M. (2024) Evolution: No end in sight for novel incredible (heterotrophic) protists Current Biology 34: R53–R74.
DOI: 10.1016/j.cub.2023.10.065

Documents to download:
Lukes_2024_CurrBiol (pdf)
Markowitz L.M., Nearman A., Zhao Z., Boncristiani D., Butenko A., de Pablos L.M., Marin A., Xu G., Machado C.A., Schwarz R.S., Palmer-Young E.C., Evans J.D. (2024) Somy evolution in the honey bee infecting trypanosomatid parasite, Lotmaria passim G3-Genes Genomes Genetics 15: jkae258.
DOI: 10.1093/g3journal/jkae258

Documents to download:
Markowitz_2024_G3 (pdf)
More K., Kaur H., Simpson A., Spiegel F., Dacks J. (2024) Contractile vacuoles: a rapidly expanding (and occasionally diminishing?) understanding European Journal of Protistology 126078: 94.
DOI: 10.1016/j.ejop.2024.126078
More K.J., Kaufman J.G.G., Dacks J., Manna P.T. (2024) Evolutionary origins of the lysosome-related organelle sorting machinery reveal ancient homology in post-endosome trafficking pathways Proceedings of the National Academy of Sciences of the United States of America 131: 2403601121.
DOI: 10.1073/pnas.2403601121
Novak J., Treitli S.C., Füssy Z., Záhonová K., Hamplová B., Hrdá Š., Hampl V. (2024) V9 hypervariable region metabarcoding primers for Euglenozoa and Metamonada Environmental DNA 6: e70022.
DOI: 10.1002/edn3.70022

Documents to download:
Novak_2024_EnvironDNA (pdf)
Opperdoes F.R., Záhonová K., Škodová-Sveráková I., Bučková B., Chmelová L., Lukeš J., Yurchenko V. (2024) In silico prediction of the metabolism of Blastocrithidia nonstop, a trypanosomatid with non-canonical genetic code BMC Genomics 25: 184.
DOI: 10.1186/s12864-024-10094-8

Documents to download:
Opperdoes_2024_BMCGenom (pdf)
Richards T., Eme L., Archibald J., Leonard G., Coelho S.M., de Mendoza A., Dessimoz C., Doležal P., Fritz-Laylin L.K., Gabaldón T. , Hampl V., Kops G.J.P.L., Leger M.M., López-García P., McInerney J.O., Moreira D., Muñoz-Gómez S.A., Richter D.J., Ruiz-Trillo I., Santoro A., Sebé-Pedrós A., Snel B., Stairs C.W., Tromer E.C., van Hooff J.J.E., Wickstead B., Williams T.A., Roger A., Dacks J., Wideman J.G. (2024) Reconstructing the last common ancestor of all eukaryotes PLoS Biology 22: e3002917.
DOI: 10.1371/journal.pbio.3002917

Documents to download:
Richards_2024_PlosBiol (pdf)
Shinde A.P., Kučerová J., Dacks J., Tachezy J. (2024) The retromer and retriever systems are conserved and differentially expanded in parabasalids Journal of Cell Science 137: jcs261949.
DOI: 10.1242/jcs.261949
von Känel C., Stettler P., Esposito C., Berger S.A., Amodeo S., Oeljeklaus S., Calderaro S., Durante I., Rašková V., Warscheid B., Schneider A. (2024) Pam16 and Pam18 were repurposed during Trypanosoma brucei evolution to regulate the replication of mitochondrial DNA PLoS Biology 22: e3002449.
DOI: 10.1371/journal.pbio.3002449

Documents to download:
Kanel_2024_PlosBiol (pdf)
Votýpka J., Zeman Š., Stříbrná E., Pajer P., Bartoš O., Kment P., Lukeš J., Lukeš J. (2024) Multiple trypanosomatid co-infections of insects: the Cuban case study Parasitology 151: 567–578.
DOI: 10.1017/S0031182024000453

Documents to download:
Votypkova_2024_Parasitol (pdf)
Albanaz A.T.S., Carrington M., Frolov A., Ganyukova A., Gerasimov E.S., Lukeš J., Malysheva M., Votýpka J., Zakharova A., Záhonová K., Zimmer S., Yurchenko V., Butenko A. (2023) Shining the spotlight on the neglected: new high-quality genome assemblies as a gateway to understanding the evolution of Trypanosomatidae BMC Genomics 24: 471.
DOI: 10.1186/s12864-023-09591-z

Documents to download:
Albanaz_2023 (pdf)
Barlow L.D., Maciejowski W., More K., Terry K., Vargová R., Záhonová K., Dacks J. (2023) Comparative Genomics for Evolutionary Cell Biology Using AMOEBAE: Understanding the Golgi and Beyond In: Y. Wang, V.V. Lupashin, T.R. Graham (Eds), Golgi, Methods in Molecular Biology. Humana Press, New York 2557: 431–452.
DOI: 10.1007/978-1-0716-2639-9_26
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