List of publications

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Total found: 381 records
Albanaz A.T.S., Gerasimov E.S., Shaw J.J., Sádlová J., Lukeš J., Volf P., Opperdoes F.R., Kostygov A., Butenko A., Yurchenko V. (2021) Genome snalysis of endotrypanum and porcisia spp., closest phylogenetic relatives of Leishmania, highlights the role of amastins in shaping pathogenicity Genes 12: 444.
DOI: 10.3390/genes12030444
Butenko A., Hammond M., Field M., Ginger M., Yurchenko V., Lukeš J. (2021) Reductionist Pathways for Parasitism in Euglenozoans? Expanded Datasets Provide New Insights Trends in Parasitology 37: 100–116.
DOI: 10.1016/j.pt.2020.10.001

Documents to download:
Butenko_2021_TrendsPar (pdf)
Kostygov A., Karnkowska A., Votýpka J., Tashyreva D., Maciszewski K., Yurchenko V., Lukeš J. (2021) Euglenozoa: taxonomy, diversity and ecology, symbioses and viruses Open Biology 11: 200407.
DOI: 10.1098/rsob.200407

Documents to download:
Kostygov_2021_OpenBiology (pdf)
Lukeš J., Kaur B., Speijer D. (2021) RNA editing in Mitochondria and plastids: weird and widespread Trends in Genetics 37: 2.
DOI: 10.1016/j.tig.2020.10.004

Documents to download:
Lukes_2021_TiG (pdf)
Lukeš J., Tesařová M., Votýpka J., Yurchenko V. (2021) Characterization of a new cosmopolitan genus of trypanosomatid parasites, Obscuromonas gen. nov. (Blastocrithidiinae subfam. nov.) European Journal of Protistology 79: 125778.
DOI: 10.1016/j.ejop.2021.125778

Documents to download:
Lukes_2021_EJP (pdf)
Opperdoes F.R., Butenko A., Zakharova A., Gerasimov E.S., Zimmer S., Lukeš J., Yurchenko V. (2021) The Remarkable Metabolism of Vickermania ingenoplastis: Genomic Predictions Pathogens 10: E68.
DOI: 10.3390/pathogens10010068

Documents to download:
Opperdoes_2021_Pathogens (pdf)
Quintana J.F., Zoltner M., Field M. (2021) Evolving Differentiation in African Trypanosomes Trends in Parasitology 37: 296-303.
DOI: 10.1016/j.pt.2020.11.003
Alghamdi A.H., Munday J.C., Campagnaro G.D., Gurvic D., Svensson F., Field M. (2020) Positively selected modifications in the pore of TbAQP2 allow pentamidine to enter Trypanosoma brucei eLife 11: e56416.
DOI: 10.7554/eLife.56416
Aphasizheva I., Alfonzo J., Carnes J., Cruz-Reyes J., Göringer H.U., Hajduk S., Lukeš J., Madison-Antenucci S., Maslov D., Mcdermott S., Ochsenreiter T., Read L., Salavati R., Schnaufer A., Schneider A., Simpson L., Stuart K., Yurchenko V., Zhou Z.H., Panicucci Zíková A., Zhang L., Zimmer S., Aphasizhev R. (2020) Lexis and Grammar of Mitochondrial RNAProcessing in Trypanosomes Trends in Parasitology 36: 4.
DOI: 10.1016/j.pt.2020.01.006

Documents to download:
Aphasizheva_2020_TrendsinParasitology (pdf)
Butenko A., Opperdoes F.R., Flegontova O., Horák A., Hampl V., Keeling P., Gawryluk R., Tikhonenkov D.V., Flegontov P., Lukeš J. (2020) Evolution of metabolic capabilities and molecular features of diplonemids, kinetoplastids, and euglenids BMC biology 18: 23.
DOI: 10.1186/s12915-020-0754-1

Documents to download:
Butenko_BMC-Biology_2020 (pdf)
Castro Machado F., Bittencourt-Cunha P., Malvezzi A.M., Arico M. , Radio S., Smircich P., Zoltner M., Field M., Schenkman S. (2020) EIF2 alpha phosphorylation is regulated in intracellular amastigotes for the generation of infectiveTrypanosoma cruzitrypomastigote forms Cellular Microbiology 22: e13243.
DOI: 10.1111/cmi.13243
Chambouvet A., Smilansky V., Jirků M., Isidoro-Ayza M., Itoiz S., Derrelle E. , Monier A., Gower D., Wilkinson M., Yabsley M., Lukeš J., Richards T. (2020) Diverse alveolate infections of tadpoles, a new threat to frogs? PLoS Pathogens 16: e1008107.
DOI: 10.1371/journal.ppat.1008107

Documents to download:
Chambouvet_2020_PLoSPathog (pdf)
D'avila-Levy C., Bearzatto B., Ambroise J., Helaers R. , Butenko A., Yurchenko V., Morelli K., Santos H., Brouillard P., Grellier P., Gala J.-L., Vikkula M. (2020) First draft genome of the Trypanosomatid Herpetomonas muscarum ingenoplastis through MinION Oxford nanopore technology and illumina sequencing Tropical Medicine and Infectious Disease 5: 25.
DOI: 10.3390/tropicalmed5010025
Dixit S., Alfonzo J., Lukeš J. (2020) RNA-binding proteins and their targets in Trypanosoma brucei: single nucleotide resolution using iCLIP and iCLAP In P.A.M. Michels, M. Ginger, D. Zilberstein (Eds.), Trypanosomatids. Methods in Molecular Biology. Springer Nature, New York 2116: 303–323.
DOI: 10.1007/978-1-0716-0294-2_19

Documents to download:
Chapter_Dixit_2020_Trypanosomatids (pdf)
Durante I., Butenko A., Rašková V., Charyyeva A., Svobodová M., Yurchenko V., Hashimi H., Lukeš J. (2020) Large-Scale Phylogenetic Analysis of Trypanosomatid Adenylate Cyclases Reveals Associations with Extracellular Lifestyle and Host-Pathogen Interplay Genome Biology and Evolution 12: 2403–2416.
DOI: 10.1093/gbe/evaa226

Documents to download:
Durante_2020_GenomeBiolEvol (pdf)
d’Avila-Levy C., Bearzatto B., Ambroise J., Helaer R., Butenko A., Yurchenko V., Morelli K., Santos H., Brouillard P., Grellier P., Gala J.-L., Vikkula M. (2020) First Draft Genome of the Trypanosomatid Herpetomonas muscarum ingenoplastis through MinION Oxford Nanopore Technology and Illumina Sequencing Tropical Medicine and Infectious Disease 5: 25.
DOI: 10.3390/tropicalmed5010025
Faktorová D., Kaur B., Valach M., Graf L., Benz C., Burger G., Lukeš J. (2020) Targeted integration by homologous recombination enables in situ tagging and replacement of genes in the marine microeukaryote Diplonema papillatum Environmental Microbiology 22: 3660–3670.
DOI: 10.1111/1462-2920.15130

Documents to download:
Faktorová_2020_Env_Microbiology (pdf)
Faktorová D., Nisbet E.R., Kachale A., Kaur B., et al., Lukeš J. (2020) Genetic tool development in marine protists: emerging model organisms for experimental cell biology Nature Methods 17: 481–494.
DOI: 10.1038/s41592-020-0796-x

Documents to download:
Faktorova_2020_NatureMethods (pdf)
Flegontova O., Flegontov P., Castaňeda Londoňo P., Walczowski W., Śantić D., Edgcomb V., Lukeš J., Horák A. (2020) Environmental determinants of the distribution of planktonic diplonemids and kinetoplastids in the oceans Environmental Microbiology 22: 4014–4031.
DOI: 10.1111/1462-2920.15190

Documents to download:
Flegontova_2020_EnvMicrob (pdf)
Füssy Z., Záhonová K., Tomčala A., Krajčovič J., Yurchenko V., Oborník M., Eliáš M. (2020) The Cryptic Plastid of Euglena longa Defines a New Type of Nonphotosynthetic Plastid Organelle mSphere 5: e00675-20.
DOI: 10.1128/mSphere.00675-20
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