List of publications

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Total found: 364 records
Contreras M., Rafael M., Sobrino I., Almazán C., Pastor Comín J.J., Valdés J. J., Prudencio C.R., de Lima Neto D.F., Borin V.A., Agarwal P.K., Kasaija P.D., Fernández-Melgar R., Rutaisire J., de la Fuente J. (2025) Modelling protein-protein interactions for the design of vaccine chimeric antigens with protective epitopes PLoS One 20: e0318439.
DOI: 10.1371/journal.pone.0318439
Damnjanović D., Nazarizadeh M., Pavel V., Chutný B., Johnsen A., Nováková M., Štefka J. (2025) Expanding the known haemosporidian parasite diversity in Eurasian bluethroat (Luscinia svecica) subspecies through amplicon sequencing International Journal for Parasitology 55: 137–150.
DOI: 10.1016/j.ijpara.2024.11.007
Flegontova O., Işıldak U., Yüncü E., Williams M.P., Huber C.D., Koči J., Vyazov L.A., Changmai P., Flegontov P. (2025) Performance of qpAdm-based screens for genetic admixture on graph-shaped histories and stepping stone landscapes Genetics 230: iyaf047.
DOI: 10.1093/genetics/iyaf047
Gruber A., Vohnoutová M., McCay C., Rocap G., Oborník M. (2025) ASAFind 2.0: multi-class protein targeting prediction for diatoms and algae with complex plastids. Plant Journal 122: e70138.
DOI: 10.1111/tpj.70138
Lazaridis I., Patterson N., Anthony D., Vyazov L., Fournier R., Ringbauer H., Olalde I., Khokhlov A.A., Kitov E.P., Flegontov P., Flegontova O., Szécsényi-Nagy A., Palamara P.F., Mallick S., Rohland N., Pinhasi R., Reich D. (2025) The genetic origin of the Indo-Europeans Nature 639: 132–142.
DOI: 10.1038/s41586-024-08531-5
Liu S., Powel V., Yang S.M., Lam F., Bowler C., Oborník M., Dorrell R.G., Dorrell R.G. (2025) Dynamic relocalization and divergent expression of a major facilitator carrier subfamily in diatoms. Physiologia Plantarum 177: e70355.
DOI: 10.1111/ppl.70355
Malych R., Folgosa F., Pilátová J., Mikeš L., Dohnálek V., Mach J., Matějková M., Kopecký V., Doležal P., Sutak R. (2025) Eating the brain - a multidisciplinary study provides new insights into the mechanisms underlying the cytopathogenicity of Naegleria fowleri. PloS Pathogens 21: e1012995.
DOI: 10.1371/journal.ppat.1012995
Nazarizadeh M., Nováková M., Vlček J., Štefka J. (2025) Host-associated genetic differentiation in the face of ongoing gene flow: ecological speciation in a pathogenic parasite of freshwater fish. Molecular Biology and Evolution 42: msaf163.
DOI: 10.1093/molbev/msaf163
Petrash D., Valero A., Umbria Salinas K., Thomazo C., Meador Travis B., Laufek F., Valdés J. J., Chrastný V., Konhause K.O. (2025) Redox dynamics and metal cycling in the carbonate-buffered sediment–water interface of the ferruginous and sulfatic Lake Medard, Czech Republic. Journal of Sedimentary Research 95: 707–722.
DOI: 10.2110/jsr.2024.155
Tashyreva D., Votýpka J., Yabuki A., Horák A., Lukeš J. (2025) Description of new diplonemids (Diplonemea, Euglenozoa) and their endosymbionts: Charting the morphological diversity of these poorly known heterotrophic flagellates Protist 177: 126090.
DOI: 10.1016/j.protis.2025.126090

Documents to download:
Tashyreva_2025_Protist (pdf)
Yang S., Gruber A., Jiroutová K., Richtová J., Vancová M., Tesařová M., Masařová P., Dorrell R.G., Oborník M. (2025) Localization of heme biosynthesis in the diatom Phaeodactylum tricornutum and differential expression of multi-copy enzymes. Frontiers in Plant Science 16: 1537037.
DOI: 10.3389/fpls.2025.1537037
Bartošová-Sojková P., Butenko A., Richtová J., Fiala I., Oborník M., Lukeš J. (2024) Inside the host: understanding the evolutionary trajectories of intracellular parasitism ANNUAL REVIEW OF MICROBIOLOGY 78: 3.1–3.21.
DOI: 10.1146/annurev-micro-041222-025305

Documents to download:
Bartosova-Sojkova_2024_AnnRep (pdf)
Damnjanović D., Nazarizadeh M., Wisniewska M., Pavel V., Chutný B., Johnsen A., Nováková M., Štefka J. (2024) Limited genetic depletion despite extinction risk: genomic diversity of a peripheral population of red-spotted bluethroats in central Europe Zoological Journal of the Linnean Society 201: zlae094.
DOI: 10.1093/zoolinnean/zlae094
del Campo J., Carlos-Oliveira M., Čepička I., Hehenberger E., Horák A., Karnkowska A., Kolísko M., Lara E., Lukeš J., Pánek T., Piwosz K., Richter D.J., Škaloud P., Šuťák R., Tachezy J., Hampl V. (2024) The protist cultural renaissance Trends in Microbiology 32: 128-131.
DOI: 10.1016/j.tim.2023.11.010

Documents to download:
delCampo_2024_TrendsParasitol (pdf)
Füssy Z., Oborník M. (2024) Complex Endosymbioses I: From Primary to Complex Plastids, Serial Endosymbiotic Events In: E. Maréchal (Ed.), Methods in Molecular Biology: Plastids. 2776: pp. 21–41.
DOI: 10.1007/978-1-0716-3726-5_2
Gruber A., Kroth P. (2024) Translocation of proteins into four membrane-bound complex plastids of red algal origin. In: S.D. Schwartzbach, P.G. Kroth, M. Oborník (Eds.) Endosymbiotic Organelle Acquisition. Springer, Cham, pp. 433–463.
DOI: 10.1007/978-3-031-57446-7_15
Gruber A., Oborník M. (2024) Evolution of plastids and mitochondria in diatoms. In: J.W. Goessling, J. Serôdio, J. Lavaud (Eds.), Diatom Photosynthesis: From Primary Production to High Value. Scrivener Publishing LLC, Berverly, pp. 79–110.
DOI: 10.1002/9781119842156.ch3
Jirsová D., Wideman J.G. (2024) Integrated overview of stramenopile ecology, taxonomy, and heterotrophic origin ISME Journal 18: wrae150.
DOI: 10.1093/ismejo/wrae150
Kitzberger F., Yang S., Týč J., Bílý T., Nebesářová J. (2024) An advanced fast method for the evaluation of multiple immunolabelling using gold nanoparticles based on low-energy STEM Scientific Reports 14: 10150.
DOI: 10.1038/s41598-024-60314-0
Konupková A., Tomečková L., Záhonová K., Oborník M., Füssy Z. (2024) CHAPTER: Easier Lost than Found? What We Know about Plastid Genome Reduction In: S.D. Schwartzbach, P.G. Kroth, M. Oborník (Eds.) Endosymbiotic Organelle Acquisition. Springer, Cham: pp. 147–181.
DOI: 10.1007/978-3-031-57446-7_5
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